RNA Is an Integral Component of Chromatin that Contributes to Its Structural Organization

Chromatin structure is influenced by multiples factors, such as pH, temperature, nature and concentration of counterions, post-translational modifications of histones and binding of structural non-histone proteins. RNA is also known to contribute to the regulation of chromatin structure as chromatin-induced gene silencing was shown to depend on the RNAi machinery in S. pombe, plants and Drosophila. Moreover, both in Drosophila and mammals, dosage compensation requires the contribution of specific non-coding RNAs. However, whether RNA itself plays a direct structural role in chromatin is not known. Here, we report results that indicate a general structural role for RNA in eukaryotic chromatin. RNA is found associated to purified chromatin prepared from chicken liver, or cultured Drosophila S2 cells, and treatment with RNase A alters the structural properties of chromatin. Our results indicate that chromatin-associated RNAs, which account for 2%–5% of total chromatin-associated nucleic acids, are polyA− and show a size similar to that of the DNA contained in the corresponding chromatin fragments. Chromatin-associated RNA(s) are not likely to correspond to nascent transcripts as they are also found bound to chromatin when cells are treated with α-amanitin. After treatment with RNase A, chromatin fragments of molecular weight >3.000 bp of DNA showed reduced sedimentation through sucrose gradients and increased sensitivity to micrococcal nuclease digestion. This structural transition, which is observed both at euchromatic and heterochromatic regions, proceeds without loss of histone H1 or any significant change in core-histone composition and integrity

A Monte Carlo Simulation-Based Approach to Evaluate the Performance of Three Meteorological Drought Indices in Northwest of Iran

Although meteorological drought indices are considered as important tools for drought monitoring, they are embedded with different theoretical and experimental structures. Regarding the different geographic and climatic conditions around the world, the most meteorological drought indices have been commonly applied for drought monitoring in different parts of the world. Interestingly, it is observed that such indices in the published studies on drought monitoring have usually yielded inconsistent performance. On the other hand, most studies on drought monitoring as well as the performance of drought indices has been based on short-term historical data (less than 50 years). Therefore, this study aimed to analyze and compare the performance of three common indices of SPI, RAI and PNPI to predict long-term drought events using the Monte Carlo procedure and historical data. To do this end, the 50-year recorded or historical rainfall data across 11 synoptic stations in the Northwest of Iran were employed to generate 1000 synthetic data series so that the characteristics of long-term drought might be determined and the performance of those three indices might be analyzed and compared. The results indicated a very high comparative advantage of the SPI in terms of yielding a satisfactory and detailed analysis to determine the characteristics of long-term drought. Also, the RAI indicated significant deviations from normalized natural processes. However, these results could not reasonably and sufficiently predict long-term drought. Finally, the PNPI was determined as the most uncertain and spatial index (depending on average or coefficient of variation of rainfall data) in drought monitoring

Soy consumption and mortality in Hong Kong: Proxy-reported case-control study of all older adult deaths in 1998

Objectives: This study investigates the relation between soy consumption and mortality in a population-based case-control study in Hong Kong of all adult deaths in 1998. Methods: Multivariable logistic regression was used to assess the effect of soy on all-cause and cause-specific mortality in 21,494 deceased cases and 10,968 living controls who were ethnic Chinese aged 60 or above, using proxy reports collected from the person registering the death. Dietary habits were obtained from proxies in both cases and controls, based on a 7-item questionnaire. Results: The adjusted odds ratios for all-cause mortality for soy consumption 4 or more times a week compared with less than once a month were 0.77 (95% CI: 0.62, 0.95) for men and 0.66 (0.54, 0.81) for women. Mortality from lung cancer (males P = 0.02, females P = 0.02), colorectal cancer (males P = 0.07, females P < 0.001), stomach cancer (males P = 0.04, females P = 0.03), female breast cancer (P = 0.02) and ischemic heart disease (males P < 0.001, females P = 0.002) was inversely associated with soy consumption. Conclusions: Our study suggests that maintaining traditional levels of soy consumption could be protective for some chronic diseases in China. © 2006 Elsevier Inc. All rights reserved.link_to_subscribed_fulltex

Diet synergies and mortality - A population-based case-control study of 32 462 Hong Kong Chinese older adults

Background: Food and drink are not consumed in isolation and can have complimentary effects enhancing or blocking the overall uptake of nutrients. We investigated how combinations of foods, drinks, and smoking affected mortality. Method: Adjusted logistic regression was used to assess the joint effect of healthy foods, less healthy foods, smoking, and alcohol use on mortality in a case-control study of all Chinese adults aged 60 or over who died in 1998; 21 494 dead cases (81% of all registered deaths) and 10 968 live controls were included. Results: There was a significant trend of increasing all-cause mortality risk with decreasing healthy food consumption (P < 0.001), and the increase in risk was significantly steeper for people with high intakes of less healthy food (P for interaction <0.001). There was a steeper risk from increasing less healthy food intake in ever-smokers and people not drinking tea regularly (P < 0.001), while the J-shaped relationship between alcohol and mortality differed in shape with level of less healthy food intake. Conclusion: Intake of some dietary items may modify the effect of others. An analysis framework explicitly recognizing complementary and potentially synergistic effects of food, drinks, and smoking could enhance our understanding of dietary epidemiology. © 2006 Oxford University Press.link_to_subscribed_fulltex

Early life second hand smoke exposure and serious infectious morbidity during the first eight years: Evidence from Hong Kong's 'Children of 1997' birth cohort

Abstract and poster presentatio